Three years of 300 kHz acoustic doppler current profiler data collected in the central Ligurian Sea are analysed to investigate the variability of the zooplankton biomass and the diel vertical migration in the upper thermocline. After a pre-processing phase aimed at avoiding the slant range attenuation, hourly volume backscattering strength time series are obtained. Despite the lack of concurrent net samples collection, different migration patterns are identified and their temporal variability examined by means of time-frequency analysis. The effect of changes in the environmental condition is also investigated. The highest zooplankton biomasses are observed in April-May just after the peak of surface primary production in March-April. The main migration pattern found here points to a "nocturnal" migration, with zooplankton organisms occurring deeper in the water column during the day and shallower at night. Also, twilight migration is highlighted during this study. The largest migrations are recorded in November-December, corresponding to lowest backscattering strength values and they are likely attributable to larger and more active organisms (i.e. euphausiids and mesopelagic fish). The results suggest further applications of the available historical acoustic doppler current profiler time series. © 2014 Author(s).

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